JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMRT2_chr9_1045357_1062552	0/0	t0014	743	2	2	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0015	743	2	2	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0016	743	2	1	1	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0017	743	2	0	0	1	0	1	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0018	743	2	0	0	0	0	2	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0019	743	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0020	743	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0021	743	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0022	743	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0023	743	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0024	743	1	0	0	0	1	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0025	743	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0026	743	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0027	743	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0028	743	1	0	0	1	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0029	743	1	0	0	0	0	1	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0030	743	1	0	0	1	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0031	743	1	0	0	0	1	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0032	743	1	0	0	0	0	1	copy fasta	DMRT2	chr9	1045357	1062552
DMRT3_chr9_971655_996732	0/0	t0001	1075	187	24	35	92	7	29	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/1	t0002	1075	106	21	14	61	4	5	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	1/0	t0003	1075	61	0	14	42	3	1	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0004	1075	29	28	1	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0005	1075	22	4	3	13	1	1	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0006	1075	16	4	7	5	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0007	1075	7	4	1	0	2	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0008	1075	3	2	1	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0009	1075	3	3	0	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0010	1075	3	0	3	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0011	1075	3	0	3	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0012	1075	2	2	0	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0013	1075	2	1	1	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0014	1075	1	0	0	0	0	1	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0015	1075	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0016	1075	1	0	0	0	1	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0017	1075	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0018	1075	1	0	0	0	0	1	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0019	1075	1	0	1	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0020	1075	1	1	0	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0021	1075	1	1	0	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0022	1075	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0023	1075	1	0	0	0	0	1	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0024	1075	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0025	1075	1	0	0	0	0	1	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0026	1075	1	1	0	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	t0027	1075	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRTA1_chr9_22441824_22460740	0/0	t0001	4072	146	16	15	94	6	15	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/1	t0002	4070	48	6	13	15	4	9	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0003	4069	40	0	20	14	2	4	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0004	4070	30	19	0	10	0	1	copy fasta	DMRTA1	chr9	22441824	22460740