JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMRTA1_chr9_22441824_22460740	0/0	t0005	4070	19	0	1	16	0	2	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	1/0	t0006	4072	16	0	9	0	1	5	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0007	4070	10	9	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0008	4070	9	9	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0009	4070	8	4	0	0	0	4	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0010	4072	8	4	0	3	0	1	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0011	4070	5	5	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0012	4070	5	0	0	5	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0013	4072	5	1	0	4	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0014	4070	5	5	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0015	4070	4	4	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0016	4072	4	4	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0017	4072	4	0	0	4	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0018	4070	4	0	2	0	2	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0019	4072	3	0	0	3	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0020	4072	3	0	0	3	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0021	4072	3	0	3	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0022	4070	2	1	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0023	4070	2	1	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0024	4069	2	1	0	1	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0025	4069	2	0	0	2	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0026	4072	2	2	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0027	4070	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0028	4070	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0029	4070	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0030	4070	1	0	0	0	0	1	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0031	4070	1	0	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0032	4070	1	0	0	1	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0033	4072	1	0	0	1	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0034	4072	1	0	0	1	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0035	4072	1	0	0	1	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0036	4072	1	0	0	1	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0037	4072	1	0	0	1	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0038	4072	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0039	4072	1	0	0	0	0	1	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0040	4072	1	0	0	1	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0041	4070	1	0	0	0	0	1	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0042	4069	1	0	0	0	0	1	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0043	4070	1	0	0	0	0	1	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0044	4070	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0045	4070	1	0	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0046	4072	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0047	4072	1	0	0	0	1	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0048	4072	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	t0049	4072	1	0	0	1	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA2_chr1_50412550_50428443	0/1	t0001	1450	116	42	28	28	7	10	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	t0002	1452	114	9	25	64	4	12	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	1/0	t0003	1452	29	1	1	8	1	17	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	t0004	1450	14	14	0	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	t0005	1451	11	4	2	5	0	0	copy fasta	DMRTA2	chr1	50412550	50428443