JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMRTA2_chr1_50412550_50428443	0/0	t0006	1453	11	10	1	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	t0007	1450	5	5	0	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	t0008	1450	3	2	1	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	t0009	1450	2	2	0	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	t0010	1450	1	0	1	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	t0011	1452	1	0	0	1	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	t0012	1450	1	1	0	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	t0013	1450	1	0	0	0	0	1	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	t0014	1452	1	0	1	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTB1_chr1_53454399_53472488	1/1	t0001	882	372	83	51	186	14	36	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	t0002	882	7	6	1	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	t0003	882	6	6	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	t0004	882	2	0	0	2	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	t0005	882	2	0	2	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	t0006	882	1	1	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	t0007	882	1	0	0	1	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	t0008	882	1	0	0	1	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	t0009	882	1	1	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	t0010	882	1	1	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTC1B_chrX_72771890_72853803	0/0	t0001	894	2	0	0	1	0	1	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0002	888	2	0	2	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0003	882	2	2	0	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0004	885	2	1	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0005	916	1	0	0	0	0	1	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0006	909	1	0	0	1	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0007	909	1	0	0	0	0	1	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0008	903	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0009	900	1	1	0	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0010	898	1	0	0	1	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0011	897	1	0	0	1	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0012	897	1	1	0	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0013	891	1	0	0	1	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0014	891	1	1	0	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0015	885	1	0	0	1	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0016	891	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0017	885	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0018	882	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0019	882	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0020	873	1	1	0	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0021	876	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	t0022	915	1	0	0	1	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1_chrX_72867025_72948837	0/0	t0001	797	7	2	0	5	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0002	791	7	1	1	5	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0003	791	6	0	0	0	3	3	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0004	794	4	1	0	3	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0005	806	2	0	0	1	1	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0006	797	2	0	0	2	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0007	791	2	0	0	2	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0008	788	2	0	0	0	0	2	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0009	785	2	0	1	1	0	0	copy fasta	DMRTC1	chrX	72867025	72948837