JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMRTC1_chrX_72867025_72948837	0/0	t0010	773	2	1	0	0	0	1	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0011	815	1	0	0	0	0	1	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0012	809	1	0	0	1	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0013	803	1	0	0	1	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0014	804	1	1	0	0	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0015	800	1	1	0	0	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0016	794	1	0	0	1	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0017	793	1	0	0	1	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0018	791	1	1	0	0	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0019	794	1	0	0	0	0	1	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0020	788	1	1	0	0	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0021	800	1	0	0	0	0	1	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0022	794	1	0	1	0	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0023	788	1	0	0	1	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0024	782	1	0	1	0	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0025	788	1	0	0	0	0	1	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0026	785	1	0	0	1	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0027	782	1	0	0	0	0	1	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC1_chrX_72867025_72948837	0/0	t0028	781	1	0	1	0	0	0	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC2_chr19_41840042_41857333	1/1	t0001	702	387	75	73	181	16	40	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	t0002	694	5	5	0	0	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	t0003	702	3	3	0	0	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	t0004	702	3	0	0	3	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	t0005	702	1	0	0	1	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	t0006	702	1	1	0	0	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	t0007	702	1	0	0	1	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	t0008	702	1	0	1	0	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMTF1_chr7_87147453_87201325	1/1	t0001	1420	312	76	52	154	9	19	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	t0002	1408	17	3	8	1	3	2	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	t0003	1420	16	1	2	13	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	t0004	1420	5	5	0	0	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	t0005	1420	5	0	0	5	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	t0006	1420	4	4	0	0	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	t0007	1420	1	0	0	0	0	1	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	t0008	1420	1	1	0	0	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	t0009	1420	1	0	0	1	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTN_chr8_22051814_22087525	0/0	t0001	1557	221	37	43	104	12	25	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0002	1557	32	5	17	1	2	7	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0003	1557	23	21	1	0	1	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0004	1557	9	8	1	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0005	1557	5	5	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0006	1557	5	5	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0007	1557	4	4	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/1	t0008	1557	4	0	2	0	1	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0009	1557	3	1	0	1	0	1	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0010	1557	3	3	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0011	1557	2	2	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0012	1542	2	0	0	0	0	2	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0013	1557	1	1	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	1/0	t0014	1557	1	0	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525