JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMTN_chr8_22051814_22087525	0/0	t0015	1557	1	1	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0016	1557	1	1	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0017	1557	1	1	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0018	1557	1	0	0	1	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0019	1557	1	0	0	1	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0020	1557	1	0	1	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0021	1557	1	0	0	0	0	1	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0022	1557	1	0	1	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	t0023	1557	1	1	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMWD_chr19_45777947_45797845	0/0	t0001	1385	137	19	16	87	2	13	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0002	1385	102	28	21	39	5	9	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0003	1385	77	1	27	27	6	16	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	1/1	t0004	1386	54	8	7	31	3	3	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0005	1386	13	4	0	7	0	2	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0006	1384	13	13	0	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0007	1384	8	5	1	1	0	1	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0008	1386	7	1	2	3	0	1	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0009	1384	7	0	0	5	2	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0010	1384	5	0	1	1	0	3	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0011	1384	3	3	0	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0012	1386	2	2	0	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0013	1385	2	1	1	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0014	1385	1	0	0	1	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0015	1386	1	0	1	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0016	1386	1	0	0	1	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0017	1385	1	1	0	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0018	1385	1	0	0	0	0	1	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0019	1386	1	0	1	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0020	1385	1	0	0	1	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0021	1385	1	0	0	0	0	1	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0022	1385	1	0	1	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	t0023	1385	1	0	1	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMXL1_chr5_119066087_119254127	0/1	t0001	2391	163	37	48	33	11	33	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	1/0	t0002	2392	22	14	2	0	0	5	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0003	2391	9	9	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0004	2393	8	3	1	3	1	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0005	2391	6	6	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0006	2391	5	0	0	4	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0007	2391	3	3	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0008	2395	2	2	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0009	2391	2	0	2	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0010	2391	2	2	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0011	2391	2	2	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0012	2389	2	2	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0013	2391	2	0	0	1	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0014	2388	2	2	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0015	2391	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0016	2389	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0017	2391	1	0	0	1	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0018	2391	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127