JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMXL1_chr5_119066087_119254127	0/0	t0019	2391	1	0	1	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0020	2391	1	0	0	1	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0021	2391	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	t0022	2391	1	0	0	1	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL2_chr15_51442791_51627771	0/1	t0001	1420	242	37	43	136	1	24	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	t0002	1424	57	31	2	24	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	t0003	1420	28	6	12	1	2	7	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	t0004	1420	6	6	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	1/0	t0005	1420	4	0	2	0	0	1	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	t0006	1420	2	2	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	t0007	1420	2	2	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	t0008	1420	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	t0009	1420	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	t0010	1420	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	t0011	1424	1	0	1	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	t0012	1420	1	0	0	0	1	0	copy fasta	DMXL2	chr15	51442791	51627771
DNA2_chr10_68409064_68476973	1/1	t0001	1085	159	27	20	83	8	19	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0002	1085	71	18	15	28	3	7	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0003	1083	42	4	8	22	0	8	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0004	1085	37	28	2	0	1	6	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0005	1082	3	3	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0006	1085	3	3	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0007	1085	2	0	2	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0008	1085	1	1	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0009	1083	1	0	0	0	0	1	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0010	1085	1	0	1	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0011	1082	1	1	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0012	1083	1	0	0	1	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0013	1085	1	0	0	1	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0014	1085	1	1	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0015	1085	1	0	0	1	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	t0016	1085	1	0	0	0	0	1	copy fasta	DNA2	chr10	68409064	68476973
DNAAF10_chr2_68124805_68162527	0/0	t0001	1525	113	2	24	63	6	18	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	1/1	t0002	1518	109	2	26	65	3	11	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0003	1525	63	15	9	29	3	7	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0004	1527	13	1	6	5	0	1	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0005	1522	9	7	2	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0006	1517	9	0	1	7	1	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0007	1526	9	4	3	2	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0008	1516	8	8	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0009	1527	7	2	1	4	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0010	1518	7	6	1	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0011	1518	7	7	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0012	1529	6	5	1	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0013	1524	5	0	0	5	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0014	1521	4	3	1	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0015	1529	4	0	1	2	1	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0016	1531	4	1	0	0	0	3	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0017	1529	3	2	1	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0018	1519	3	0	0	3	0	0	copy fasta	DNAAF10	chr2	68124805	68162527