JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAAF10_chr2_68124805_68162527	0/0	t0019	1524	3	1	1	1	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0020	1519	3	3	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0021	1519	3	3	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0022	1517	3	3	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0023	1519	2	0	1	1	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0024	1524	2	0	0	2	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0025	1527	2	0	0	1	0	1	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0026	1541	2	2	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0027	1519	2	2	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0028	1513	2	2	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0029	1548	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0030	1532	1	0	1	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0031	1528	1	0	1	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0032	1533	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0033	1531	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0034	1531	1	0	0	0	0	1	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0035	1518	1	0	0	0	0	1	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0036	1538	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0037	1546	1	0	1	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0038	1544	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0039	1528	1	0	1	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0040	1544	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0041	1518	1	0	0	1	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0042	1558	1	0	1	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0043	1556	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0044	1530	1	0	1	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0045	1518	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0046	1525	1	0	1	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0047	1517	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0048	1513	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0049	1525	1	0	0	1	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0050	1516	1	0	0	0	0	1	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0051	1539	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0052	1535	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	t0053	1515	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF11_chr8_132565416_132680545	1/1	t0001	1943	213	41	37	98	9	26	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	t0002	1943	42	22	5	6	3	6	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	t0003	1943	10	8	1	0	1	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	t0004	1943	2	1	0	0	1	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	t0005	1943	2	2	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	t0006	1943	2	2	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	t0007	1943	1	1	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	t0008	1943	1	1	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	t0009	1943	1	1	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	t0010	1943	1	1	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	t0011	1943	1	0	1	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF1_chr16_84140308_84182918	0/0	t0001	211	234	48	39	111	11	25	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	1/0	t0002	211	178	35	36	83	3	20	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	t0003	211	18	0	3	13	1	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/1	t0004	212	13	9	2	0	0	1	copy fasta	DNAAF1	chr16	84140308	84182918