JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAAF1_chr16_84140308_84182918	0/0	t0005	211	5	0	4	0	1	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	t0006	212	5	1	3	0	0	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	t0007	211	1	0	0	1	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	t0008	211	1	0	1	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	t0009	212	1	1	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF2_chr14_49620174_49640244	0/1	t0001	464	149	45	45	26	11	21	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	t0002	464	90	31	14	33	4	8	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	1/0	t0003	464	83	0	6	66	3	7	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	t0004	464	13	11	2	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	t0005	464	7	6	1	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	t0006	465	5	5	0	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	t0007	464	2	0	2	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	t0008	464	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	t0009	448	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	t0010	465	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF3_chr19_55153665_55171613	1/1	t0001	493	385	93	78	152	13	47	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	t0002	493	7	0	0	7	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	t0003	493	3	0	0	0	0	3	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	t0004	493	1	1	0	0	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	t0005	514	1	0	0	1	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	t0006	493	1	0	0	0	1	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF4_chr15_55425308_55513234	1/1	t0001	731	248	24	57	113	13	39	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	t0002	731	39	23	4	7	1	4	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	t0003	731	36	30	3	2	0	1	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	t0004	731	6	6	0	0	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	t0005	731	5	5	0	0	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	t0006	731	2	0	0	2	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	t0007	731	2	2	0	0	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF5_chr7_721699_791475	0/0	t0001	845	142	37	35	40	8	22	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	1/1	t0002	845	79	14	16	39	3	5	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0003	845	72	6	16	31	1	18	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0004	845	35	7	1	27	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0005	845	17	16	1	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0006	845	11	0	0	11	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0007	845	7	5	2	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0008	845	4	0	0	4	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0009	845	3	3	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0010	845	2	2	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0011	845	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0012	845	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0013	845	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0014	845	1	0	0	0	0	1	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0015	845	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	t0016	845	1	0	1	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF6_chrX_107201611_107249247	1/0	t0001	1033	203	72	26	80	3	21	copy fasta	DNAAF6	chrX	107201611	107249247
DNAAF6_chrX_107201611_107249247	0/1	t0002	1033	91	1	17	63	2	7	copy fasta	DNAAF6	chrX	107201611	107249247
DNAAF6_chrX_107201611_107249247	0/0	t0003	1033	1	0	0	1	0	0	copy fasta	DNAAF6	chrX	107201611	107249247
DNAAF6_chrX_107201611_107249247	0/0	t0004	1033	1	1	0	0	0	0	copy fasta	DNAAF6	chrX	107201611	107249247
DNAAF8_chr16_4729537_4754396	0/0	t0001	895	173	6	47	92	11	17	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	1/1	t0002	895	163	54	21	63	3	20	copy fasta	DNAAF8	chr16	4729537	4754396