JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAAF8_chr16_4729537_4754396	0/0	t0003	895	18	15	0	3	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	t0004	895	11	1	4	3	2	1	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	t0005	895	6	6	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	t0006	895	5	0	4	1	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	t0007	895	3	3	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	t0008	895	1	1	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	t0009	895	1	0	0	1	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	t0010	895	1	1	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	t0011	895	1	0	0	0	0	1	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	t0012	895	1	0	0	1	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	t0013	895	1	0	0	0	0	1	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	t0014	895	1	1	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF9_chr20_3244306_3412669	0/0	t0001	3379	87	2	22	48	4	11	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0002	3379	86	10	17	44	5	10	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/1	t0003	3379	61	21	4	28	2	5	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0004	3379	34	19	9	1	4	1	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0005	3379	29	0	0	26	0	3	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0006	3379	6	3	0	3	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0007	3380	5	2	3	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0008	3380	4	0	0	4	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0009	3374	4	4	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	1/0	t0010	3379	4	1	2	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0011	3379	4	0	0	4	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0012	3379	3	3	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0013	3380	3	3	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0014	3379	2	2	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0015	3379	2	2	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0016	3379	2	2	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0017	3379	2	0	0	2	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0018	3379	2	2	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0019	3379	2	2	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0020	3379	2	0	2	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0021	3379	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0022	3379	1	0	0	0	0	1	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0023	3379	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0024	3379	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0025	3379	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0026	3379	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0027	3379	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0028	3379	1	0	1	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0029	3379	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0030	3379	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0031	3379	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0032	3379	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0033	3379	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0034	3379	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0035	3379	1	0	0	0	0	1	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0036	3379	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0037	3379	1	0	0	0	1	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	t0038	3379	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669