JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAH10_chr12_123757301_123940714	0/0	t0001	274	89	52	19	6	3	9	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	1/1	t0002	270	81	28	15	14	3	19	copy fasta	DNAH10	chr12	123757301	123940714
DNAH11_chr7_21538039_21906839	1/0	t0001	793	76	36	15	19	2	3	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0002	786	61	5	5	45	0	6	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0003	786	50	10	12	21	3	4	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/1	t0004	786	38	9	11	7	3	7	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0005	786	25	6	4	9	2	4	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0006	786	11	0	0	11	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0007	793	5	5	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0008	785	4	4	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0009	818	3	0	0	1	0	2	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0010	887	3	0	0	3	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0011	777	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0012	780	2	2	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0013	770	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0014	793	2	2	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0015	790	2	0	2	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0016	785	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0017	786	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0018	793	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0019	765	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0020	773	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0021	793	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0022	790	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0023	786	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0024	793	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0025	818	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0026	793	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	t0027	786	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH12_chr3_57288700_57549344	1/1	t0001	263	243	61	56	82	6	36	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	t0002	262	17	16	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	t0003	265	4	3	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	t0004	262	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH14_chr1_224924675_225404286	1/1	t0001	212	233	66	50	72	12	31	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	t0002	212	6	0	0	6	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	t0003	195	1	0	0	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH17_chr17_78418697_78582396	1/1	t0001	337	207	65	48	55	8	29	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	t0002	337	32	13	10	2	4	3	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	t0003	337	7	0	4	3	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	t0004	337	2	0	2	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	t0005	337	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	t0006	337	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	t0007	337	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	t0008	337	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH1_chr3_52311319_52405492	1/1	t0001	308	180	78	38	32	6	24	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	t0002	296	2	2	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH2_chr17_7712744_7838742	1/0	t0001	1280	143	40	32	54	2	14	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	t0002	1280	77	12	19	35	1	10	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	t0003	1280	53	23	5	14	2	9	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/1	t0004	1280	20	3	12	0	0	4	copy fasta	DNAH2	chr17	7712744	7838742