JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAH2_chr17_7712744_7838742	0/0	t0005	1280	10	0	3	7	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	t0006	1280	4	3	1	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	t0007	1280	2	0	1	0	1	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	t0008	1280	2	0	0	0	0	2	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	t0009	1280	2	0	0	2	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	t0010	1280	1	1	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	t0011	1280	1	0	1	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	t0012	1280	1	0	0	0	0	1	copy fasta	DNAH2	chr17	7712744	7838742
DNAH3_chr16_20928111_21155846	1/1	t0001	355	217	75	39	73	3	25	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	t0002	355	15	1	1	9	3	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	t0003	355	2	0	0	0	0	2	copy fasta	DNAH3	chr16	20928111	21155846
DNAH5_chr5_13685328_13949688	1/1	t0001	1907	104	30	23	33	1	15	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0002	1907	90	27	28	27	1	7	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0003	1907	10	5	2	2	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0004	1907	7	2	0	4	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0005	1907	6	6	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0006	1907	6	6	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0007	1907	5	5	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0008	1907	4	0	0	4	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0009	1907	4	4	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0010	1907	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0011	1907	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0012	1907	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0013	1907	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0014	1907	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0015	1907	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0016	1929	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0017	1907	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0018	1907	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0019	1907	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0020	1907	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0021	1907	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0022	1907	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0023	1907	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0024	1907	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	t0025	1907	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH6_chr2_84511498_84824589	1/1	t0001	276	112	56	26	10	4	14	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	t0002	276	2	2	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	t0003	276	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	t0004	276	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH7_chr2_195732703_196073837	1/1	t0001	345	111	32	14	58	2	3	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	t0002	352	68	15	14	33	3	3	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	t0003	349	29	13	4	10	0	2	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	t0004	349	23	14	6	0	1	2	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	t0005	345	9	3	3	0	2	1	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	t0006	345	8	8	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	t0007	345	3	0	3	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	t0008	352	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	t0009	352	1	0	0	0	0	1	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	t0010	356	1	0	0	1	0	0	copy fasta	DNAH7	chr2	195732703	196073837