JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAH7_chr2_195732703_196073837	0/0	t0011	345	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	t0012	349	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH8_chr6_38710311_39035792	0/0	t0001	540	245	73	59	71	6	36	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	t0002	540	37	2	2	31	0	2	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	t0003	540	1	0	1	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	t0004	540	1	1	0	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH9_chr17_11593470_11974748	1/1	t0001	251	173	73	26	44	8	20	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	t0002	251	3	3	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	t0003	251	2	0	0	2	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAI1_chr9_34453805_34525984	1/1	t0001	430	349	74	74	149	16	34	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	t0002	430	31	5	3	23	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	t0003	430	1	0	1	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	t0004	430	1	1	0	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI2_chr17_74269234_74319884	0/0	t0001	465	197	11	29	135	4	18	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	1/1	t0002	475	111	37	22	32	5	13	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	t0003	475	89	52	13	6	3	15	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	t0004	465	1	0	0	1	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI3_chr1_85057327_85138138	1/1	t0001	315	373	90	66	170	15	30	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	t0002	315	1	0	0	0	1	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI4_chr1_66807885_66929856	1/1	t0001	1271	255	69	50	88	12	34	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	t0002	1271	2	2	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	t0003	1271	2	2	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	t0004	1271	2	2	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	t0005	1271	1	0	0	0	1	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	t0006	1271	1	1	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	t0007	1271	1	0	0	0	1	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI7_chr12_25103289_25200160	1/1	t0001	342	302	76	69	112	10	33	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	t0002	342	23	5	7	0	2	9	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	t0003	342	11	11	0	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAJA1_chr9_33020273_33044907	1/1	t0001	1126	278	57	39	137	9	34	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0002	1126	37	0	11	24	0	2	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0003	1134	10	2	0	7	1	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0004	1136	10	1	1	8	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0005	1152	9	3	1	4	1	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0006	1150	8	1	0	7	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0007	1168	8	0	5	2	1	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0008	1164	6	2	1	1	0	2	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0009	1166	6	1	5	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0010	1154	5	0	0	4	0	1	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0011	1162	5	0	3	2	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0012	1172	5	2	2	1	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0013	1140	4	0	2	1	0	1	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0014	1142	4	4	0	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0015	1144	4	1	0	2	0	1	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0016	1148	4	2	1	1	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0017	1158	4	1	1	1	1	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0018	1160	4	0	1	3	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0019	1170	3	1	2	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0020	1174	3	0	0	3	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0021	1126	2	2	0	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907