JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJA1_chr9_33020273_33044907	0/0	t0022	1166	2	0	2	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0023	1126	2	2	0	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0024	1126	2	2	0	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0025	1132	2	0	1	1	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0026	1138	2	0	1	1	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0027	1146	2	1	1	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0028	1176	2	1	0	1	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0029	1126	1	0	0	1	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0030	1126	1	0	0	0	1	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0031	1203	1	0	0	1	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0032	1199	1	0	0	1	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0033	1126	1	0	0	0	0	1	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0034	1132	1	0	1	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0035	1140	1	1	0	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0036	1154	1	1	0	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0037	1168	1	1	0	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0038	1170	1	1	0	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA1_chr9_33020273_33044907	0/0	t0039	1126	1	0	1	0	0	0	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA2_chr16_46950362_46978674	0/1	t0001	1769	229	47	43	100	11	27	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	1/0	t0002	1770	32	24	6	0	0	1	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	t0003	1770	5	1	2	2	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	t0004	1769	3	0	3	0	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	t0005	1770	2	2	0	0	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	t0006	1769	2	2	0	0	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	t0007	1770	1	1	0	0	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	t0008	1769	1	0	0	1	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	t0009	1769	1	0	0	0	1	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	t0010	1769	1	0	1	0	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	t0011	1769	1	0	0	1	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	t0012	1770	1	0	1	0	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	t0013	1769	1	1	0	0	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA3_chr16_4420868_4461775	0/1	t0001	1258	180	47	49	59	7	17	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	t0002	1258	151	39	23	63	8	18	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	t0003	1258	7	7	0	0	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	t0004	1258	2	0	0	2	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	t0005	1258	1	0	0	1	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	t0006	1258	1	0	0	0	1	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	t0007	1258	1	0	0	1	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	t0008	1258	1	1	0	0	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	t0009	1258	1	0	0	0	0	1	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA4_chr15_78259562_78287191	0/1	t0001	1933	184	25	28	110	3	17	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0002	1933	52	1	16	21	4	10	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0003	1936	52	3	14	20	5	10	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0004	1936	44	16	5	15	1	7	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0005	1936	24	0	2	20	0	2	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0006	1932	21	19	2	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0007	1933	9	3	1	5	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0008	1932	7	6	1	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0009	1933	7	7	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0010	1936	6	1	2	1	1	1	copy fasta	DNAJA4	chr15	78259562	78287191