JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJA4_chr15_78259562_78287191	0/0	t0011	1932	4	3	1	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0012	1933	3	2	0	1	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0013	1933	3	1	0	2	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0014	1933	2	1	0	1	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0015	1932	2	2	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0016	1933	2	0	0	2	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0017	1926	2	0	0	2	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0018	1936	2	0	0	2	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0019	1936	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0020	1933	1	0	0	1	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	1/0	t0021	1934	1	0	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0022	1933	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0023	1933	1	0	0	0	0	1	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0024	1933	1	0	1	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0025	1933	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0026	1933	1	0	0	1	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0027	1936	1	0	1	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0028	1936	1	0	0	1	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0029	1936	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0030	1936	1	0	0	0	1	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0031	1936	1	0	0	1	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0032	1936	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0033	1936	1	0	0	0	1	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	t0034	1936	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJB11_chr3_186565720_186590793	0/0	t0001	564	280	49	58	121	15	37	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB11_chr3_186565720_186590793	1/1	t0002	564	77	39	12	14	3	7	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB11_chr3_186565720_186590793	0/0	t0003	564	5	0	3	2	0	0	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB11_chr3_186565720_186590793	0/0	t0004	564	3	3	0	0	0	0	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB11_chr3_186565720_186590793	0/0	t0005	564	3	3	0	0	0	0	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB11_chr3_186565720_186590793	0/0	t0006	564	1	0	1	0	0	0	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB11_chr3_186565720_186590793	0/0	t0007	564	1	0	0	1	0	0	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB12_chr10_72327863_72359919	1/0	t0001	1808	146	40	29	49	5	22	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/1	t0002	1806	73	8	23	19	5	17	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0003	1802	25	15	7	3	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0004	1808	11	0	0	11	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0005	1808	10	10	0	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0006	1806	7	7	0	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0007	1806	3	1	2	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0008	1804	3	3	0	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0009	1806	3	3	0	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0010	1808	2	0	0	2	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0011	1802	1	1	0	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0012	1808	1	1	0	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0013	1808	1	1	0	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0014	1808	1	0	0	0	0	1	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0015	1808	1	0	0	0	0	1	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0016	1806	1	0	1	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0017	1808	1	0	0	1	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0018	1808	1	0	0	0	0	1	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	t0019	1808	1	0	0	1	0	0	copy fasta	DNAJB12	chr10	72327863	72359919