JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJB13_chr11_73946026_73975281	1/1	t0001	212	433	98	82	191	14	46	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	t0002	212	1	1	0	0	0	0	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	t0003	212	1	0	0	1	0	0	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	t0004	212	1	1	0	0	0	0	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB14_chr4_99891248_99951618	1/0	t0001	4828	58	13	7	27	2	8	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0002	4830	54	0	7	44	0	3	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0003	4829	34	0	4	28	0	2	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/1	t0004	4827	34	2	13	15	0	3	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0005	4828	21	4	9	2	3	3	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0006	4828	20	7	3	10	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0007	4830	12	9	3	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0008	4828	10	9	1	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0009	4827	8	7	0	0	0	1	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0010	4829	6	2	2	1	0	1	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0011	4828	6	2	1	0	0	3	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0012	4832	5	0	1	0	1	3	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0013	4833	4	4	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0014	4831	4	2	2	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0015	4828	4	3	1	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0016	4829	3	1	1	1	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0017	4831	3	3	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0018	4828	3	0	0	3	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0019	4829	3	2	0	0	0	1	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0020	4830	3	0	0	3	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0021	4828	3	0	3	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0022	4828	3	0	2	0	0	1	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0023	4829	2	2	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0024	4828	1	0	0	0	0	1	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0025	4828	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0026	4828	1	0	0	0	0	1	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0027	4828	1	0	0	0	0	1	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0028	4830	1	0	0	1	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0029	4828	1	0	0	0	1	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0030	4827	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0031	4828	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0032	4827	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0033	4828	1	0	1	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0034	4829	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0035	4829	1	0	0	1	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0036	4831	1	0	0	1	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0037	4828	1	0	0	0	1	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0038	4833	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0039	4828	1	0	1	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0040	4827	1	0	0	1	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0041	4828	1	0	1	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0042	4829	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0043	4828	1	0	1	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0044	4830	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0045	4829	1	0	0	1	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0046	4830	1	0	0	1	0	0	copy fasta	DNAJB14	chr4	99891248	99951618