JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJB14_chr4_99891248_99951618	0/0	t0047	4832	1	0	0	0	1	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0048	4828	1	0	1	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0049	4828	1	0	0	1	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0050	4828	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0051	4827	1	0	0	0	1	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0052	4828	1	0	1	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0053	4828	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0054	4828	1	0	0	1	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0055	4829	1	0	0	0	0	1	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	t0056	4828	1	0	0	0	0	1	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB1_chr19_14509769_14523397	0/0	t0001	1220	277	57	62	115	11	32	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0002	1220	17	4	6	1	2	4	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0003	1220	11	4	6	0	1	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0004	1220	6	6	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0005	1220	5	5	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0006	1220	5	4	1	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0007	1220	5	0	0	0	0	5	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0008	1220	4	0	1	3	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0009	1220	4	3	1	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0010	1220	4	4	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0011	1220	3	3	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0012	1220	2	2	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0013	1220	1	1	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0014	1220	1	0	1	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0015	1220	1	0	0	1	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0016	1220	1	1	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0017	1220	1	0	0	0	0	1	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0018	1220	1	1	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	t0019	1220	1	1	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB2_chr2_219274366_219291895	1/1	t0001	2098	325	59	72	144	12	36	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0002	2097	33	13	0	19	0	1	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0003	2098	31	0	3	28	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0004	2098	13	9	0	0	0	4	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0005	2098	7	6	1	0	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0006	2098	3	0	3	0	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0007	2098	2	2	0	0	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0008	2098	1	0	0	1	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0009	2097	1	1	0	0	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0010	2098	1	0	0	0	0	1	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0011	2097	1	1	0	0	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0012	2098	1	0	0	0	1	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0013	2098	1	1	0	0	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0014	2098	1	0	0	0	0	1	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0015	2098	1	0	0	0	1	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0016	2097	1	1	0	0	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0017	2098	1	1	0	0	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0018	2098	1	0	1	0	0	0	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB2_chr2_219274366_219291895	0/0	t0019	2098	1	0	0	0	0	1	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB4_chr1_77999939_78022964	0/1	t0001	1891	258	35	58	120	10	34	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB4_chr1_77999939_78022964	0/0	t0002	1891	53	28	1	18	0	6	copy fasta	DNAJB4	chr1	77999939	78022964