JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJB4_chr1_77999939_78022964	1/0	t0003	1890	50	4	16	22	2	5	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB4_chr1_77999939_78022964	0/0	t0004	1893	23	0	0	23	0	0	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB4_chr1_77999939_78022964	0/0	t0005	1891	12	8	2	0	0	2	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB4_chr1_77999939_78022964	0/0	t0006	1892	9	0	0	9	0	0	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB4_chr1_77999939_78022964	0/0	t0007	1890	8	8	0	0	0	0	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB4_chr1_77999939_78022964	0/0	t0008	1891	6	6	0	0	0	0	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB4_chr1_77999939_78022964	0/0	t0009	1891	1	0	0	1	0	0	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB4_chr1_77999939_78022964	0/0	t0010	1891	1	1	0	0	0	0	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB4_chr1_77999939_78022964	0/0	t0011	1891	1	0	1	0	0	0	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB4_chr1_77999939_78022964	0/0	t0012	1891	1	0	0	1	0	0	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB4_chr1_77999939_78022964	0/0	t0013	1891	1	0	0	0	0	1	copy fasta	DNAJB4	chr1	77999939	78022964
DNAJB5_chr9_34984745_35003428	1/0	t0001	1389	248	72	30	121	4	20	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/1	t0002	1389	120	15	12	83	2	7	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0003	1389	53	2	32	0	6	13	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0004	1389	6	0	2	0	0	4	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0005	1389	5	3	2	0	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0006	1389	3	0	0	3	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0007	1389	2	0	0	2	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0008	1389	2	2	0	0	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0009	1389	2	0	0	2	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0010	1389	1	1	0	0	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0011	1389	1	0	0	1	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0012	1389	1	0	0	1	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0013	1389	1	0	1	0	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0014	1389	1	0	0	1	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0015	1399	1	0	0	1	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0016	1389	1	1	0	0	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0017	1389	1	0	0	1	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	t0018	1389	1	0	1	0	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB6_chr7_157332004_157422439	0/0	t0001	1509	182	45	34	79	8	16	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/1	t0002	1509	108	7	27	60	2	11	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0003	1509	30	28	2	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	1/0	t0004	1509	9	0	0	5	0	3	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0005	1509	8	0	5	2	0	1	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0006	1509	4	4	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0007	1509	4	0	0	0	0	4	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0008	1509	4	2	2	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0009	1505	3	3	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0010	1509	3	2	1	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0011	1509	2	1	1	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0012	1509	2	0	0	0	0	2	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0013	1509	2	2	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0014	1509	1	0	0	1	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0015	1509	1	1	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0016	1509	1	0	0	0	0	1	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0017	1509	1	0	0	1	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0018	1509	1	1	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0019	1509	1	0	0	1	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0020	1509	1	1	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0021	1509	1	0	0	1	0	0	copy fasta	DNAJB6	chr7	157332004	157422439