JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJB6_chr7_157332004_157422439	0/0	t0022	1509	1	0	0	0	0	1	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0023	1509	1	0	0	0	0	1	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	t0024	1509	1	1	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB7_chr22_40854549_40867113	1/0	t0001	1636	167	10	12	118	7	19	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/1	t0002	1636	135	33	49	19	8	25	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0003	1636	38	4	1	33	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0004	1636	20	20	0	0	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0005	1636	18	18	0	0	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0006	1635	12	0	0	11	1	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0007	1635	4	3	1	0	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0008	1636	4	0	0	4	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0009	1636	3	0	1	0	2	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0010	1636	2	1	1	0	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0011	1636	1	0	1	0	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0012	1635	1	1	0	0	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0013	1636	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0014	1636	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0015	1635	1	1	0	0	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0016	1636	1	1	0	0	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	t0017	1636	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB8_chr3_128457437_128471890	0/0	t0001	1414	220	10	40	133	10	27	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	1/0	t0002	1414	105	45	20	26	2	11	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0003	1414	48	7	3	36	0	2	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/1	t0004	1414	18	3	5	2	2	5	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0005	1414	17	9	3	5	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0006	1414	9	0	7	0	0	2	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0007	1414	5	0	0	5	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0008	1414	5	5	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0009	1414	5	3	0	0	1	1	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0010	1414	4	0	0	4	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0011	1414	4	3	1	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0012	1414	2	0	1	0	1	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0013	1414	2	1	1	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0014	1414	2	2	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0015	1414	2	1	1	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0016	1414	2	0	0	2	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0017	1414	1	1	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0018	1414	1	0	0	1	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0019	1414	1	1	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0020	1414	1	1	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0021	1414	1	0	0	1	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0022	1414	1	1	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0023	1414	1	0	0	1	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	t0024	1414	1	1	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB9_chr7_108564874_108579850	1/1	t0001	1738	271	37	43	145	13	31	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0002	1738	62	16	17	18	0	11	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0003	1739	36	0	7	28	1	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0004	1739	19	18	1	0	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0005	1736	13	12	1	0	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0006	1738	7	2	0	4	0	1	copy fasta	DNAJB9	chr7	108564874	108579850