JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJB9_chr7_108564874_108579850	0/0	t0007	1738	5	4	1	0	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0008	1738	4	2	2	0	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0009	1738	4	0	0	4	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0010	1738	1	1	0	0	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0011	1738	1	1	0	0	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0012	1738	1	0	0	1	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0013	1738	1	0	0	0	0	1	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0014	1738	1	0	0	1	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0015	1738	1	0	0	1	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0016	1738	1	1	0	0	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0017	1738	1	0	0	1	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0018	1738	1	0	0	1	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0019	1738	1	1	0	0	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0020	1738	1	1	0	0	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0021	1738	1	0	0	1	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	t0022	1738	1	0	0	1	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJC10_chr2_182711257_182799464	0/0	t0001	17759	41	4	9	22	0	6	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0002	17758	19	2	2	13	1	1	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0003	17750	12	1	7	0	3	1	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0004	17761	11	0	3	7	1	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0005	17757	10	0	2	8	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0006	17758	9	0	0	9	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0007	17759	7	0	0	7	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0008	17754	7	6	1	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0009	17760	6	0	2	1	0	3	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0010	17754	6	1	0	2	0	3	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0011	17756	6	5	1	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0012	17752	6	0	0	6	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0013	17756	4	0	0	4	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0014	17764	4	0	0	4	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0015	17756	4	0	0	4	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0016	17766	4	0	4	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0017	17746	4	0	0	4	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0018	17765	3	0	0	3	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0019	17759	3	0	0	3	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0020	17760	3	0	0	3	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0021	17754	3	0	0	3	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0022	17753	3	0	0	3	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0023	17764	3	3	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0024	17752	3	0	0	3	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0025	17750	2	2	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0026	17761	2	2	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0027	17759	2	0	2	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0028	17758	2	0	1	0	1	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0029	17760	2	0	0	2	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0030	17764	2	0	0	2	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0031	17762	2	0	2	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0032	17752	2	0	1	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0033	17746	2	0	0	2	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0034	17756	2	0	0	2	0	0	copy fasta	DNAJC10	chr2	182711257	182799464