JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC10_chr2_182711257_182799464	0/0	t0085	17760	1	0	1	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0086	17756	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0087	17760	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0088	17758	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0089	17750	1	0	1	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0090	17746	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0091	17751	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0092	17751	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0093	17759	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0094	17762	1	0	0	0	0	1	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0095	17758	1	0	1	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0096	17758	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0097	17756	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0098	17760	1	0	0	0	0	1	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0099	17766	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0100	17752	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0101	17760	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0102	17752	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0103	17754	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0104	17760	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0105	17743	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0106	17756	1	0	1	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0107	17754	1	0	1	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0108	17762	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0109	17758	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0110	17750	1	0	0	0	0	1	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0111	17762	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0112	17738	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0113	17754	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0114	17768	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0115	17752	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0116	17756	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0117	17754	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0118	17752	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0119	17754	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0120	17743	1	0	0	0	0	1	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0121	17770	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0122	17751	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0123	17752	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0124	17747	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0125	17768	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0126	17766	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0127	17762	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0128	17751	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0129	17759	1	0	0	0	0	1	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0130	17761	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0131	17756	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	t0132	17750	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC11_chr1_6629170_6706816	0/0	t0001	1522	104	32	16	36	5	15	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0002	1522	95	12	20	46	3	14	copy fasta	DNAJC11	chr1	6629170	6706816