JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC11_chr1_6629170_6706816	1/1	t0003	1522	94	30	8	47	0	7	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0004	1522	30	1	25	0	4	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0005	1522	4	4	0	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0006	1522	4	0	1	0	0	3	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0007	1521	3	3	0	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0008	1522	3	0	0	3	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0009	1522	3	3	0	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0010	1522	3	3	0	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0011	1522	3	1	1	0	1	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0012	1522	2	0	1	0	1	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0013	1522	2	0	2	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0014	1522	2	2	0	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0015	1522	2	0	0	1	0	1	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0016	1522	1	1	0	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0017	1522	1	1	0	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0018	1522	1	0	0	1	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0019	1522	1	0	0	0	0	1	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0020	1522	1	0	0	0	0	1	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0021	1522	1	1	0	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0022	1522	1	1	0	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0023	1522	1	1	0	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0024	1522	1	0	0	1	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0025	1522	1	0	0	0	0	1	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0026	1522	1	0	0	0	0	1	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	t0027	1522	1	0	0	1	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC12_chr10_67791669_67843188	1/0	t0001	625	203	67	41	56	11	27	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/1	t0002	625	77	3	7	60	1	5	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	t0003	625	73	0	6	61	0	6	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	t0004	625	11	6	2	0	1	2	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	t0005	625	7	6	1	0	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	t0006	625	6	6	0	0	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	t0007	625	3	0	0	3	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	t0008	625	2	0	1	0	1	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	t0009	625	1	1	0	0	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	t0010	625	1	1	0	0	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC13_chr3_132412502_132544032	1/1	t0001	1023	157	37	36	63	5	14	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	t0002	1023	107	36	22	40	2	7	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	t0003	1023	37	1	10	19	1	6	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	t0004	1023	8	7	1	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	t0005	1025	3	3	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	t0006	1036	2	0	0	0	0	2	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	t0007	1023	1	0	0	1	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	t0008	1023	1	0	0	1	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	t0009	1023	1	0	0	0	0	1	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	t0010	1023	1	0	1	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC14_chr12_55815985_55834587	0/0	t0001	1150	400	90	74	181	17	38	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	1/0	t0002	1148	5	4	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0003	1150	4	0	0	4	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0004	1150	3	0	0	3	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0005	1150	2	0	1	0	1	0	copy fasta	DNAJC14	chr12	55815985	55834587