JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC14_chr12_55815985_55834587	0/0	t0006	1150	2	0	2	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0007	1150	1	0	0	1	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0008	1150	1	0	1	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0009	1150	1	1	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0010	1150	1	0	0	1	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0011	1150	1	1	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0012	1150	1	0	0	0	0	1	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0013	1150	1	0	0	0	0	1	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0014	1150	1	0	0	1	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	t0015	1150	1	0	0	1	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/1	t0016	1150	1	0	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC15_chr13_43018586_43119213	0/0	t0001	7005	52	10	10	28	1	3	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/1	t0002	7003	47	7	3	34	1	1	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0003	7001	40	9	18	4	4	5	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	1/0	t0004	7007	27	2	0	24	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0005	7005	14	1	5	7	1	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0006	7002	12	0	4	8	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0007	6998	10	0	0	6	0	4	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0008	7009	8	8	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0009	7013	7	1	0	1	2	3	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0010	7006	6	0	0	6	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0011	7011	6	0	4	0	0	2	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0012	7001	6	5	1	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0013	7003	6	0	1	0	0	5	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0014	7001	6	0	1	2	2	1	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0015	7011	5	0	0	5	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0016	7007	5	0	2	2	0	1	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0017	7003	5	0	3	1	0	1	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0018	7011	5	0	0	5	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0019	7003	5	5	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0020	7002	4	3	1	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0021	7002	4	0	0	4	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0022	7005	4	0	0	0	0	4	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0023	7002	3	3	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0024	7006	3	3	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0025	7005	3	3	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0026	7001	3	0	2	0	0	1	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0027	7013	2	2	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0028	7007	2	2	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0029	6995	2	0	2	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0030	7000	2	2	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0031	6998	2	0	0	1	0	1	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0032	7003	2	2	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0033	6999	2	0	0	1	1	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0034	7001	2	0	0	0	0	2	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0035	6999	2	0	0	2	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0036	7006	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0037	7004	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0038	7004	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0039	7002	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213