JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC15_chr13_43018586_43119213	0/0	t0040	7002	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0041	7004	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0042	7021	1	0	1	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0043	7019	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0044	7015	1	0	1	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0045	7009	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0046	7011	1	0	1	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0047	7011	1	0	1	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0048	7011	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0049	7009	1	0	1	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0050	7009	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0051	7001	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0052	7005	1	0	1	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0053	7005	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0054	7005	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0055	7005	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0056	7005	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0057	7003	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0058	6999	1	0	1	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0059	6999	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0060	6999	1	0	1	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0061	7014	1	0	0	0	1	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0062	7004	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0063	6998	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0064	7007	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0065	7007	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0066	7007	1	1	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0067	7007	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0068	7005	1	0	1	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0069	7003	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0070	7001	1	0	0	0	1	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0071	7001	1	0	0	0	0	1	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0072	7001	1	0	0	0	0	1	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	t0073	7001	1	0	0	1	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC16_chr1_15521848_15576733	0/0	t0001	3689	106	21	19	54	4	8	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	1/1	t0002	3686	101	4	22	52	8	13	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0003	3686	72	31	15	16	2	8	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0004	3686	16	9	5	0	2	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0005	3686	9	0	3	3	0	3	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0006	3688	5	1	0	4	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0007	3686	5	5	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0008	3689	4	2	1	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0009	3687	4	1	0	3	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0010	3688	3	0	0	3	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0011	3685	3	0	0	3	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0012	3686	2	2	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0013	3687	2	1	1	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0014	3687	2	0	1	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0015	3689	1	0	0	0	0	1	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0016	3686	1	0	1	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733