JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC16_chr1_15521848_15576733	0/0	t0017	3686	1	0	1	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0018	3689	1	0	1	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0019	3689	1	1	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0020	3687	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0021	3687	1	0	1	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0022	3689	1	0	0	0	0	1	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0023	3689	1	1	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0024	3689	1	0	1	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0025	3686	1	1	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0026	3686	1	1	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0027	3686	1	1	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0028	3687	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0029	3686	1	1	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0030	3686	1	0	0	0	0	1	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0031	3688	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0032	3689	1	1	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0033	3686	1	0	1	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0034	3682	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0035	3686	1	0	0	0	0	1	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	t0036	3689	1	0	1	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC17_chr15_40760161_40812473	1/1	t0001	2807	271	49	51	127	9	33	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0002	2807	22	4	6	5	2	5	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0003	2808	17	16	1	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0004	2807	4	1	1	0	0	2	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0005	2807	4	0	1	0	3	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0006	2807	4	4	0	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0007	2806	3	1	1	0	0	1	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0008	2807	3	0	0	3	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0009	2807	3	2	1	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0010	2807	2	0	1	0	0	1	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0011	2807	2	0	0	2	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0012	2807	2	0	1	0	1	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0013	2808	2	2	0	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0014	2807	2	0	0	2	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0015	2806	1	1	0	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0016	2806	1	0	0	1	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0017	2807	1	0	0	1	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0018	2808	1	0	1	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0019	2807	1	0	0	0	1	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0020	2807	1	0	0	1	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0021	2807	1	1	0	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0022	2807	1	0	1	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0023	2807	1	1	0	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0024	2820	1	1	0	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0025	2807	1	0	0	1	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0026	2807	1	1	0	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0027	2807	1	0	1	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0028	2807	1	1	0	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0029	2807	1	1	0	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	t0030	2807	1	0	0	1	0	0	copy fasta	DNAJC17	chr15	40760161	40812473