JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC17_chr15_40760161_40812473	0/0	t0031	2806	1	0	1	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC18_chr5_139405203_139444525	1/0	t0001	4026	126	32	18	60	6	9	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/1	t0002	4026	103	7	23	49	7	16	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0003	4028	22	10	1	10	0	1	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0004	4026	20	9	5	6	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0005	4026	15	9	3	1	1	1	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0006	4026	3	3	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0007	4026	3	2	0	1	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0008	4028	2	1	1	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0009	4026	2	0	0	2	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0010	4026	2	0	0	2	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0011	4026	2	2	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0012	4026	2	2	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0013	4026	1	0	0	1	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0014	4028	1	1	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0015	4026	1	0	1	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0016	4026	1	1	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0017	4028	1	1	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0018	4026	1	1	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0019	4026	1	0	0	0	0	1	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0020	4026	1	0	0	1	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0021	4026	1	0	0	1	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0022	4026	1	0	1	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0023	4026	1	0	1	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	t0024	4026	1	1	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC19_chr3_180978709_180994736	1/1	t0001	1066	299	46	51	150	15	35	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC19_chr3_180978709_180994736	0/0	t0002	1066	89	35	22	19	3	10	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC19_chr3_180978709_180994736	0/0	t0003	1066	2	2	0	0	0	0	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC19_chr3_180978709_180994736	0/0	t0004	1066	2	2	0	0	0	0	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC19_chr3_180978709_180994736	0/0	t0005	1066	2	1	1	0	0	0	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC19_chr3_180978709_180994736	0/0	t0006	1066	1	1	0	0	0	0	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC19_chr3_180978709_180994736	0/0	t0007	1066	1	0	0	1	0	0	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC19_chr3_180978709_180994736	0/0	t0008	1066	1	0	0	0	0	1	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC19_chr3_180978709_180994736	0/0	t0009	1066	1	1	0	0	0	0	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC1_chr10_21751548_22008730	1/0	t0001	436	149	62	56	12	6	12	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	t0002	436	7	6	1	0	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/1	t0003	436	6	0	5	0	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	t0004	436	1	1	0	0	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	t0005	436	1	1	0	0	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC21_chr5_34924559_34963964	0/1	t0001	4510	148	13	34	70	9	21	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0002	4511	69	7	5	54	0	3	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0003	4512	29	5	7	11	2	4	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0004	4510	26	8	8	10	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0005	4513	15	12	1	0	2	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0006	4511	12	1	2	5	0	4	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0007	4511	10	8	2	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0008	4512	9	1	0	8	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0009	4516	8	0	3	1	3	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0010	4509	6	4	0	2	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0011	4517	4	0	0	4	0	0	copy fasta	DNAJC21	chr5	34924559	34963964