JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC21_chr5_34924559_34963964	0/0	t0012	4515	4	0	0	3	0	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0013	4510	4	0	4	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0014	4511	4	4	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0015	4510	4	0	0	4	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0016	4513	4	2	0	1	0	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0017	4512	4	0	3	0	1	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0018	4511	3	3	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0019	4511	3	0	0	1	0	2	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0020	4511	3	3	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0021	4511	3	0	0	3	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0022	4530	3	3	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0023	4508	3	3	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0024	4516	2	0	2	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0025	4512	2	0	1	0	1	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0026	4512	2	2	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0027	4510	2	0	0	2	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0028	4512	2	0	0	2	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0029	4511	2	1	0	0	0	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0030	4510	2	2	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0031	4530	2	2	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0032	4516	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0033	4516	1	0	0	0	0	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0034	4518	1	0	0	0	0	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0035	4514	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0036	4513	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0037	4512	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0038	4510	1	0	0	0	0	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0039	4510	1	0	1	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0040	4510	1	0	0	0	0	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0041	4510	1	0	0	1	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0042	4510	1	0	0	1	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0043	4510	1	0	0	1	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0044	4510	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0045	4510	1	0	0	1	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0046	4509	1	0	0	1	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0047	4509	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0048	4509	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0049	4510	1	0	0	1	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0050	4511	1	0	0	1	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0051	4513	1	0	1	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0052	4512	1	0	1	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0053	4511	1	0	1	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	1/0	t0054	4512	1	0	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0055	4511	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0056	4512	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0057	4513	1	0	0	1	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0058	4510	1	0	0	1	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0059	4512	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0060	4512	1	0	0	0	0	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0061	4510	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964