JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC21_chr5_34924559_34963964	0/0	t0062	4509	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0063	4513	1	0	0	0	0	1	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0064	4512	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	t0065	4507	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC22_chr12_49341888_49358690	1/0	t0001	3422	189	16	38	103	11	20	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0002	3422	45	31	9	0	1	4	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0003	3422	41	1	5	25	1	9	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/1	t0004	3422	11	0	6	0	2	2	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0005	3431	11	11	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0006	3418	10	8	2	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0007	3423	8	5	2	1	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0008	3422	6	0	0	6	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0009	3423	6	3	0	1	0	2	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0010	3422	4	0	0	4	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0011	3422	4	0	0	4	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0012	3422	3	0	0	3	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0013	3422	3	3	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0014	3431	3	3	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0015	3422	2	2	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0016	3422	1	0	1	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0017	3422	1	1	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0018	3422	1	1	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0019	3422	1	0	0	0	0	1	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0020	3422	1	0	0	1	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0021	3423	1	0	0	1	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0022	3422	1	1	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0023	3422	1	0	0	1	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0024	3422	1	1	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0025	3422	1	0	1	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0026	3435	1	1	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0027	3431	1	1	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0028	3423	1	0	0	0	1	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0029	3422	1	1	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0030	3419	1	1	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	t0031	3422	1	1	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC24_chr11_31364860_31437835	1/0	t0001	2521	254	50	35	133	6	29	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0002	2521	47	10	16	8	2	11	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0003	2521	18	14	4	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0004	2521	8	8	0	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0005	2521	5	0	5	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0006	2521	3	2	1	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0007	2521	2	0	0	0	0	2	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/1	t0008	2521	2	0	1	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0009	2521	2	0	0	2	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0010	2521	2	2	0	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0011	2521	1	0	0	1	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0012	2521	1	0	0	0	0	1	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0013	2521	1	0	0	0	0	1	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0014	2521	1	1	0	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0015	2521	1	1	0	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835