JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC24_chr11_31364860_31437835	0/0	t0016	2521	1	0	0	1	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0017	2521	1	0	0	1	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0018	2521	1	1	0	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0019	2521	1	1	0	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0020	2521	1	0	1	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	t0021	2521	1	0	1	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC25_chr9_111626334_111659345	1/1	t0001	1198	225	32	43	101	10	37	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	t0002	1198	76	0	2	68	3	3	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	t0003	1197	50	18	21	6	1	4	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	t0004	1198	21	18	3	0	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	t0005	1198	14	13	1	0	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	t0006	1198	13	12	1	0	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	t0007	1198	10	1	8	1	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	t0008	1198	1	0	1	0	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	t0009	1198	1	0	0	1	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	t0010	1198	1	0	0	1	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC27_chr2_24938642_24976955	1/1	t0001	4026	115	5	22	60	7	19	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0002	4026	72	11	14	44	1	2	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0003	4027	61	0	5	50	1	5	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0004	4027	41	20	7	1	3	10	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0005	4026	28	21	3	0	1	3	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0006	4026	17	14	3	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0007	4027	7	7	0	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0008	4026	6	6	0	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0009	4027	5	4	1	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0010	4026	4	0	4	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0011	4026	3	3	0	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0012	4026	3	0	1	2	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0013	4027	3	0	0	0	0	3	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0014	4026	2	0	0	2	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0015	4027	2	0	2	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0016	4026	1	1	0	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0017	4026	1	1	0	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0018	4026	1	0	1	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0019	4026	1	0	0	1	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0020	4026	1	0	0	1	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0021	4026	1	0	0	1	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0022	4026	1	0	1	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0023	4026	1	0	0	1	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0024	4027	1	1	0	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0025	4027	1	0	0	0	1	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0026	4027	1	1	0	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0027	4026	1	0	0	1	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	t0028	4027	1	1	0	0	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC28_chr21_33483055_33496716	0/1	t0001	319	330	80	57	138	15	39	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	t0002	319	77	8	19	42	3	5	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	t0003	319	5	5	0	0	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	t0004	319	2	2	0	0	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	t0005	319	1	1	0	0	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC2_chr7_103307289_103349767	1/0	t0001	426	256	63	34	124	6	28	copy fasta	DNAJC2	chr7	103307289	103349767