JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC2_chr7_103307289_103349767	0/1	t0002	426	149	24	34	68	6	16	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC2_chr7_103307289_103349767	0/0	t0003	426	1	1	0	0	0	0	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC30_chr7_73675918_73688453	1/0	t0001	1856	121	34	11	64	0	11	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0002	1856	82	43	17	12	3	7	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/1	t0003	1856	80	9	19	42	3	6	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0004	1856	78	2	18	33	7	18	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0005	1856	6	0	0	6	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0006	1856	5	1	3	0	1	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0007	1856	1	1	0	0	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0008	1856	1	1	0	0	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0009	1856	1	1	0	0	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0010	1856	1	1	0	0	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0011	1856	1	0	1	0	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0012	1856	1	0	0	1	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0013	1856	1	1	0	0	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	t0014	1856	1	0	1	0	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC3_chr13_95672139_95799988	1/0	t0001	4076	85	17	19	33	8	7	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0002	4052	73	12	7	36	5	13	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0003	4073	56	0	8	39	3	6	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0004	4078	33	5	9	16	0	3	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0005	4073	30	13	2	14	0	1	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0006	4074	13	0	2	10	0	1	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/1	t0007	4077	10	2	3	3	0	1	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0008	4056	6	6	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0009	4079	5	4	1	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0010	4053	5	0	1	4	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0011	4073	4	0	0	3	0	1	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0012	4073	4	4	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0013	4075	3	1	1	1	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0014	4078	3	0	1	0	0	2	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0015	4079	3	0	1	2	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0016	4077	3	3	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0017	4073	3	0	0	3	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0018	4073	3	3	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0019	4074	2	0	0	2	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0020	4072	2	0	0	2	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0021	4074	2	1	0	1	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0022	4070	2	2	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0023	4052	1	0	0	1	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0024	4076	1	0	0	0	0	1	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0025	4077	1	0	1	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0026	4076	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0027	4079	1	0	0	0	0	1	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0028	4076	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0029	4076	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0030	4052	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0031	4052	1	0	0	0	0	1	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0032	4072	1	0	1	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0033	4052	1	0	0	1	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0034	4053	1	0	1	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988