JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC3_chr13_95672139_95799988	0/0	t0035	4074	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0036	4074	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0037	4073	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0038	4073	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0039	4073	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0040	4074	1	0	0	1	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0041	4073	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0042	4055	1	0	1	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0043	4052	1	0	1	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0044	4070	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0045	4073	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	t0046	4052	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC4_chr11_64225548_64239281	1/1	t0001	405	322	88	66	128	5	33	copy fasta	DNAJC4	chr11	64225548	64239281
DNAJC4_chr11_64225548_64239281	0/0	t0002	405	8	1	0	6	1	0	copy fasta	DNAJC4	chr11	64225548	64239281
DNAJC4_chr11_64225548_64239281	0/0	t0003	405	5	1	0	4	0	0	copy fasta	DNAJC4	chr11	64225548	64239281
DNAJC4_chr11_64225548_64239281	0/0	t0004	405	2	0	0	2	0	0	copy fasta	DNAJC4	chr11	64225548	64239281
DNAJC4_chr11_64225548_64239281	0/0	t0005	405	1	0	0	0	0	1	copy fasta	DNAJC4	chr11	64225548	64239281
DNAJC5B_chr8_66016553_66106245	1/1	t0001	1509	102	5	35	32	10	18	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0002	1509	41	1	8	27	0	5	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0003	1509	32	23	6	2	1	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0004	1509	27	16	3	7	0	1	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0005	1508	18	18	0	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0006	1509	10	10	0	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0007	1508	6	2	1	0	0	3	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0008	1509	5	5	0	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0009	1509	3	2	0	0	1	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0010	1509	2	2	0	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0011	1509	2	0	2	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0012	1509	1	0	0	0	0	1	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0013	1508	1	1	0	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0014	1509	1	0	1	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0015	1509	1	1	0	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0016	1509	1	0	0	1	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	t0017	1509	1	0	0	1	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5G_chr2_27270433_27286499	1/0	t0001	1496	167	28	37	66	13	22	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/1	t0002	1496	114	43	30	24	3	13	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0003	1496	27	0	0	27	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0004	1496	7	5	2	0	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0005	1496	6	5	1	0	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0006	1496	5	3	2	0	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0007	1496	4	0	0	4	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0008	1496	2	2	0	0	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0009	1496	1	0	0	0	0	1	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0010	1496	1	0	0	1	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0011	1496	1	0	0	1	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0012	1496	1	0	0	1	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0013	1496	1	0	1	0	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0014	1496	1	0	0	1	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0015	1496	1	0	0	1	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	t0016	1496	1	0	1	0	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499