JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC5_chr20_63890126_63941011	1/1	t0001	4653	126	19	33	41	3	28	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0002	4653	110	37	13	58	1	1	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0003	4656	31	2	1	21	2	5	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0004	4653	9	0	3	6	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0005	4653	7	0	4	0	3	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0006	4653	6	6	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0007	4653	6	5	1	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0008	4653	5	5	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0009	4659	4	3	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0010	4653	4	0	1	0	3	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0011	4653	3	0	0	3	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0012	4656	3	3	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0013	4656	3	0	0	3	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0014	4665	2	0	0	0	1	1	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0015	4653	2	0	2	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0016	4653	2	0	0	1	0	1	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0017	4653	2	0	0	2	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0018	4653	2	0	0	1	0	1	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0019	4647	2	2	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0020	4656	2	0	2	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0021	4656	2	0	0	2	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0022	4656	2	0	0	2	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0023	4659	1	0	1	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0024	4659	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0025	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0026	4647	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0027	4647	1	0	0	0	1	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0028	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0029	4653	1	0	1	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0030	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0031	4653	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0032	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0033	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0034	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0035	4653	1	0	1	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0036	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0037	4653	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0038	4653	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0039	4653	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0040	4653	1	0	0	0	0	1	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0041	4653	1	0	1	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0042	4653	1	0	0	0	0	1	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0043	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0044	4653	1	0	1	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0045	4653	1	0	1	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0046	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0047	4653	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0048	4653	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0049	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0050	4600	1	0	0	0	0	1	copy fasta	DNAJC5	chr20	63890126	63941011