JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC5_chr20_63890126_63941011	0/0	t0051	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0052	4653	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0053	4653	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0054	4647	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0055	4653	1	0	0	0	0	1	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0056	4656	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0057	4656	1	0	0	0	0	1	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0058	4656	1	1	0	0	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC5_chr20_63890126_63941011	0/0	t0059	4653	1	0	0	1	0	0	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC6_chr1_65304543_65420871	0/0	t0001	3052	101	11	14	72	2	2	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	1/1	t0002	3050	49	4	19	12	4	8	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0003	3054	44	5	9	21	2	7	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0004	3054	33	17	6	6	1	3	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0005	3052	18	6	7	2	2	1	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0006	3054	18	7	7	0	2	2	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0007	3056	10	3	2	3	0	2	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0008	3056	8	0	4	0	1	3	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0009	3050	6	0	0	1	0	5	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0010	3048	5	0	0	4	0	1	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0011	3052	4	3	1	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0012	3054	3	3	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0013	3056	3	2	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0014	3036	3	0	0	3	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0015	3044	3	2	1	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0016	3050	2	0	1	0	0	1	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0017	3056	2	0	0	2	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0018	3056	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0019	3050	1	0	1	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0020	3050	1	0	1	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0021	3050	1	0	1	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0022	3060	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0023	3056	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0024	3054	1	0	0	0	0	1	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0025	3054	1	0	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0026	3060	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0027	3054	1	0	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0028	3052	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0029	3048	1	0	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0030	3040	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	t0031	3052	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC7_chr17_41971435_42022439	0/1	t0001	323	253	34	61	122	9	26	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC7_chr17_41971435_42022439	1/0	t0002	322	83	50	5	20	3	4	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC7_chr17_41971435_42022439	0/0	t0003	322	1	0	1	0	0	0	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC7_chr17_41971435_42022439	0/0	t0004	322	1	0	1	0	0	0	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC8_chr1_28195278_28238029	1/1	t0001	1002	135	38	33	39	6	17	copy fasta	DNAJC8	chr1	28195278	28238029
DNAJC8_chr1_28195278_28238029	0/0	t0002	1002	108	53	25	16	5	9	copy fasta	DNAJC8	chr1	28195278	28238029
DNAJC8_chr1_28195278_28238029	0/0	t0003	1002	2	0	0	2	0	0	copy fasta	DNAJC8	chr1	28195278	28238029
DNAJC8_chr1_28195278_28238029	0/0	t0004	1002	1	1	0	0	0	0	copy fasta	DNAJC8	chr1	28195278	28238029
DNAJC8_chr1_28195278_28238029	0/0	t0005	1002	1	1	0	0	0	0	copy fasta	DNAJC8	chr1	28195278	28238029
DNAJC8_chr1_28195278_28238029	0/0	t0006	1002	1	0	0	1	0	0	copy fasta	DNAJC8	chr1	28195278	28238029