JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAJC8_chr1_28195278_28238029	0/0	t0007	1002	1	0	0	0	1	0	copy fasta	DNAJC8	chr1	28195278	28238029
DNAJC8_chr1_28195278_28238029	0/0	t0008	1002	1	1	0	0	0	0	copy fasta	DNAJC8	chr1	28195278	28238029
DNAJC9_chr10_73236954_73252255	1/1	t0001	1513	262	65	43	117	8	27	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0002	1510	93	3	5	73	0	12	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0003	1513	18	16	2	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0004	1510	5	4	1	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0005	1510	4	3	1	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0006	1513	3	0	2	0	0	1	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0007	1510	2	1	1	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0008	1513	2	0	0	2	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0009	1513	2	0	2	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0010	1510	1	1	0	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0011	1513	1	0	1	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0012	1513	1	1	0	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0013	1513	1	1	0	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	t0014	1513	1	1	0	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAL1_chr14_73639986_73708732	0/0	t0001	7851	39	1	6	24	0	8	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0002	7842	31	4	0	25	1	1	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0003	7839	23	1	13	1	3	5	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	1/1	t0004	7845	18	1	7	3	1	4	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0005	7844	17	0	2	15	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0006	7851	15	0	0	15	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0007	7844	11	0	0	9	0	2	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0008	7843	10	5	2	0	2	1	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0009	7843	10	8	2	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0010	7851	9	0	4	4	0	1	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0011	7853	7	1	2	3	1	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0012	7845	5	5	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0013	7839	5	0	3	1	1	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0014	7849	5	2	0	0	1	2	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0015	7845	5	1	0	3	0	1	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0016	7848	5	5	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0017	7843	4	3	1	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0018	7844	4	0	4	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0019	7852	4	0	0	2	1	1	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0020	7852	4	4	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0021	7848	4	3	1	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0022	7839	3	0	3	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0023	7845	3	0	3	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0024	7842	3	1	2	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0025	7844	3	0	2	0	1	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0026	7845	3	0	0	3	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0027	7844	3	0	0	3	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0028	7844	3	3	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0029	7837	2	2	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0030	7845	2	0	0	2	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0031	7844	2	0	0	1	0	1	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0032	7853	2	2	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0033	7845	2	2	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0034	7843	2	0	1	0	0	1	copy fasta	DNAL1	chr14	73639986	73708732