JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNAL1_chr14_73639986_73708732	0/0	t0085	7843	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0086	7841	1	0	0	1	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0087	7843	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0088	7845	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0089	7843	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0090	7845	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0091	7844	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0092	7846	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0093	7846	1	0	1	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0094	7844	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0095	7844	1	0	0	0	0	1	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0096	7844	1	0	0	1	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0097	7840	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0098	7842	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0099	7844	1	0	0	1	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0100	7843	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0101	7842	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0102	7852	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0103	7844	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	t0104	7847	1	1	0	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL4_chr22_38773508_38799143	0/1	t0001	1157	238	37	46	117	9	28	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	1/0	t0002	1157	73	31	16	19	2	4	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0003	1157	31	3	6	10	3	9	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0004	1157	6	6	0	0	0	0	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0005	1157	6	6	0	0	0	0	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0006	1157	3	3	0	0	0	0	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0007	1157	2	0	0	0	0	2	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0008	1157	2	0	0	2	0	0	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0009	1157	2	0	0	0	0	2	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0010	1157	1	1	0	0	0	0	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0011	1157	1	1	0	0	0	0	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0012	1157	1	0	0	0	0	1	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0013	1157	1	0	0	1	0	0	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0014	1157	1	0	0	1	0	0	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0015	1157	1	1	0	0	0	0	copy fasta	DNAL4	chr22	38773508	38799143
DNAL4_chr22_38773508_38799143	0/0	t0016	1157	1	1	0	0	0	0	copy fasta	DNAL4	chr22	38773508	38799143
DNALI1_chr1_37551940_37571857	0/0	t0001	1852	182	20	43	100	6	13	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	1/0	t0002	1852	150	50	24	53	6	16	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0003	1852	38	1	5	23	2	7	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0004	1848	8	8	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0005	1852	7	0	2	1	2	2	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/1	t0006	1852	5	0	0	0	2	2	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0007	1852	2	2	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0008	1852	2	0	0	0	0	2	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0009	1852	1	0	1	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0010	1852	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0011	1852	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0012	1852	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0013	1852	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0014	1852	1	0	1	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857