JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNALI1_chr1_37551940_37571857	0/0	t0015	1852	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0016	1852	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0017	1852	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0018	1852	1	0	0	1	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0019	1852	1	0	0	1	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	t0020	1852	1	0	0	1	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNASE1L1_chrX_154396236_154414254	1/0	t0001	1702	147	4	32	82	7	21	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0002	1702	35	3	20	8	1	3	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0003	1702	25	22	3	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0004	1702	14	14	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0005	1692	11	11	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0006	1506	5	2	1	0	0	2	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0007	1702	4	4	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0008	1702	4	4	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0009	1702	3	0	0	2	0	1	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0010	1702	3	0	1	0	2	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0011	1702	3	2	1	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/1	t0012	1702	3	0	1	0	1	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0013	1692	2	2	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0014	1705	2	0	0	0	0	2	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0015	1687	2	2	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0016	1701	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0017	1703	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0018	1704	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0019	1702	1	1	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0020	1702	1	1	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0021	1702	1	1	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0022	1703	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0023	1702	1	0	0	0	0	1	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0024	1702	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0025	1698	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0026	1701	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0027	1701	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0028	1702	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0029	1702	1	1	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0030	1703	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	t0031	1703	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L2_chr16_2231444_2243711	1/1	t0001	450	412	99	72	175	16	48	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L2_chr16_2231444_2243711	0/0	t0002	450	1	1	0	0	0	0	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L2_chr16_2231444_2243711	0/0	t0003	450	1	0	0	1	0	0	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L3_chr3_58187257_58215972	1/0	t0001	497	228	62	48	84	8	25	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/1	t0002	497	117	16	26	58	4	12	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	t0003	496	14	9	3	0	2	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	t0004	497	3	3	0	0	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	t0005	497	3	2	1	0	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	t0006	497	2	2	0	0	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	t0007	497	2	2	0	0	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	t0008	497	1	1	0	0	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	t0009	497	1	1	0	0	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	t0010	497	1	0	0	0	0	1	copy fasta	DNASE1L3	chr3	58187257	58215972