JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNASE1_chr16_3649691_3663095	1/1	t0001	497	391	66	69	197	13	44	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	t0002	497	15	0	5	7	1	2	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	t0003	497	13	13	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	t0004	497	9	9	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	t0005	493	7	6	1	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	t0006	497	3	0	0	3	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	t0007	497	1	0	1	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	t0008	497	1	0	0	1	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE2B_chr1_84393484_84420018	1/1	t0001	232	425	94	79	194	12	44	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	t0002	232	1	0	1	0	0	0	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2_chr19_12870209_12886449	1/1	t0001	856	235	54	41	97	15	26	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	t0002	857	89	19	27	31	3	9	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	t0003	857	25	20	1	4	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	t0004	856	10	0	0	10	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	t0005	856	6	0	0	6	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	t0006	857	2	0	0	2	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	t0007	856	1	1	0	0	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	t0008	856	1	0	0	1	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	t0009	856	1	0	1	0	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	t0010	857	1	0	0	1	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	t0011	857	1	0	0	0	0	1	copy fasta	DNASE2	chr19	12870209	12886449
DND1_chr5_140665794_140678576	1/1	t0001	534	368	85	64	168	16	33	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	0/0	t0002	534	2	2	0	0	0	0	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	0/0	t0003	534	2	2	0	0	0	0	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	0/0	t0004	534	2	2	0	0	0	0	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	0/0	t0005	534	2	2	0	0	0	0	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	0/0	t0006	534	1	1	0	0	0	0	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	0/0	t0007	534	1	0	0	0	0	1	copy fasta	DND1	chr5	140665794	140678576
DNER_chr2_229352629_229719555	1/1	t0001	1044	167	61	31	44	6	23	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	t0002	1044	5	5	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	t0003	1044	3	0	1	0	1	1	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	t0004	1044	1	0	0	0	1	0	copy fasta	DNER	chr2	229352629	229719555
DNHD1_chr11_6492280_6577020	0/1	t0001	615	168	66	38	37	12	14	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	1/0	t0002	615	164	23	40	70	4	26	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	t0003	620	4	1	0	3	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	t0004	615	2	2	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	t0005	615	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	t0006	615	1	0	0	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	t0007	615	1	0	0	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	t0008	615	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNLZ_chr9_136354483_136368744	1/0	t0001	2560	137	29	15	75	2	15	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0002	2561	43	5	22	8	1	7	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/1	t0003	2560	34	1	4	25	3	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0004	2561	27	10	12	4	0	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0005	2571	22	6	5	1	3	7	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0006	2560	19	7	0	9	1	2	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0007	2560	19	0	0	19	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0008	2560	13	0	0	11	0	2	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0009	2560	12	0	4	8	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0010	2571	8	0	3	0	2	3	copy fasta	DNLZ	chr9	136354483	136368744