JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNLZ_chr9_136354483_136368744	0/0	t0011	2560	8	3	1	2	0	2	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0012	2571	6	2	2	0	1	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0013	2560	6	4	2	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0014	2560	5	3	2	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0015	2558	5	5	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0016	2560	4	0	3	0	0	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0017	2560	4	0	0	4	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0018	2561	3	0	0	3	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0019	2560	3	3	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0020	2571	2	0	0	0	0	2	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0021	2560	2	2	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0022	2560	2	2	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0023	2560	2	2	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0024	2560	2	0	0	2	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0025	2560	2	0	0	2	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0026	2571	1	0	0	0	0	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0027	2571	1	0	0	0	0	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0028	2560	1	0	0	0	1	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0029	2561	1	0	0	0	0	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0030	2560	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0031	2561	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0032	2560	1	0	1	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0033	2560	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0034	2560	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0035	2560	1	0	1	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0036	2561	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0037	2549	1	0	0	1	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0038	2560	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0039	2559	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0040	2561	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0041	2560	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0042	2560	1	0	1	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0043	2560	1	0	0	1	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0044	2560	1	0	0	1	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0045	2560	1	0	0	0	0	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0046	2560	1	0	0	1	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0047	2561	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0048	2561	1	0	0	0	0	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0049	2560	1	0	0	1	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0050	2560	1	0	0	1	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0051	2560	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0052	2560	1	0	0	1	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	t0053	2571	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNM1L_chr12_32674301_32750650	1/0	t0001	2304	100	32	21	25	5	16	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0002	2304	40	16	9	8	2	5	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0003	2305	24	1	16	3	0	4	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0004	2304	10	9	1	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0005	2304	6	3	3	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0006	2306	6	3	0	1	0	2	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0007	2304	5	4	1	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650