JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNM1L_chr12_32674301_32750650	0/0	t0008	2305	5	5	0	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0009	2304	5	5	0	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0010	2307	4	0	0	1	0	3	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0011	2304	4	4	0	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/1	t0012	2304	4	1	2	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0013	2304	3	3	0	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0014	2305	2	2	0	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0015	2306	2	0	0	2	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0016	2304	1	0	0	1	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0017	2304	1	0	0	0	1	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0018	2304	1	1	0	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0019	2304	1	1	0	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0020	2304	1	0	0	1	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0021	2304	1	0	0	0	0	1	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0022	2304	1	0	1	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0023	2304	1	0	0	0	0	1	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0024	2305	1	0	1	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1L_chr12_32674301_32750650	0/0	t0025	2305	1	0	1	0	0	0	copy fasta	DNM1L	chr12	32674301	32750650
DNM1_chr9_128198379_128260244	1/1	t0001	623	344	89	55	140	16	42	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	t0002	623	1	0	1	0	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	t0003	623	1	0	0	1	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	t0004	623	1	1	0	0	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	t0005	623	1	0	0	1	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	t0006	623	1	1	0	0	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	t0007	623	1	1	0	0	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM2_chr19_10713079_10836903	1/1	t0001	1021	172	27	43	64	8	28	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0002	1021	84	18	11	45	2	8	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0003	1021	9	8	1	0	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0004	1021	2	0	0	2	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0005	1021	2	2	0	0	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0006	1021	2	2	0	0	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0007	1021	1	0	0	1	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0008	1021	1	0	1	0	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0009	1021	1	0	0	1	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0010	1021	1	1	0	0	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0011	1021	1	0	0	1	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0012	1021	1	1	0	0	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	t0013	1021	1	1	0	0	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM3_chr1_171836498_172417717	0/0	t0001	5036	34	19	4	5	2	4	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0002	5040	22	6	5	7	1	3	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/1	t0003	5036	20	0	3	12	2	2	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0004	5036	12	4	1	2	0	5	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	1/0	t0005	5036	9	4	3	0	1	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0006	5040	5	1	0	1	1	2	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0007	5036	2	0	1	1	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0008	5036	2	0	0	0	0	2	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0009	5037	2	2	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0010	5038	2	2	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0011	5036	2	2	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0012	5036	2	2	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717