Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AFF3_chr2_99540419_100147590	0/0	t0029	6392	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0030	6380	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0031	6389	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0032	6389	1	0	0	1	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0033	6389	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/1	t0034	6390	1	0	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0035	6386	1	0	0	0	0	1	copy fasta	AFF3	chr2	99540419	100147590
AFF4_chr5_132870395_132968634	0/1	t0001	6045	116	15	22	52	7	19	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	1/0	t0002	6045	92	1	13	71	1	5	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0003	6046	41	2	6	22	3	8	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0004	6045	36	16	3	17	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0005	6045	27	14	8	2	1	2	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0006	6045	15	12	3	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0007	6045	10	0	8	2	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0008	6051	9	0	0	9	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0009	6044	5	4	1	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0010	6046	5	5	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0011	6041	4	3	1	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0012	6042	3	3	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0013	6045	3	2	1	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0014	6046	2	0	2	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0015	6045	2	2	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0016	6045	2	2	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0017	6045	2	2	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0018	6048	2	2	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0019	6045	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0020	6045	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0021	6045	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0022	6046	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0023	6045	1	1	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0024	6045	1	1	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0025	6045	1	0	0	0	0	1	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0026	6045	1	0	0	0	0	1	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0027	6045	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0028	6045	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0029	6045	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0030	6045	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0031	6045	1	1	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0032	6045	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0033	6048	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	t0034	6045	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFG3L2_chr18_12323944_12382227	1/1	t0001	767	191	34	42	74	11	28	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	t0002	767	85	36	9	35	1	4	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	t0003	767	82	7	23	46	2	4	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	t0004	767	9	7	2	0	0	0	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	t0005	767	4	2	2	0	0	0	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	t0006	767	2	2	0	0	0	0	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	t0007	767	1	1	0	0	0	0	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	t0008	767	1	1	0	0	0	0	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	t0009	767	1	0	0	1	0	0	copy fasta	AFG3L2	chr18	12323944	12382227