JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNM3_chr1_171836498_172417717	0/0	t0013	5036	2	1	1	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0014	5036	1	0	0	0	0	1	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0015	5038	1	0	1	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0016	5038	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0017	5038	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0018	5036	1	0	0	0	1	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0019	5036	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0020	5036	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0021	5036	1	0	1	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0022	5036	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0023	5036	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0024	5036	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0025	5039	1	0	0	0	0	1	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0026	5040	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0027	5037	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0028	5002	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0029	5036	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0030	5037	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0031	5036	1	1	0	0	0	0	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0032	5036	1	0	0	0	0	1	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	t0033	5036	1	0	0	0	0	1	copy fasta	DNM3	chr1	171836498	172417717
DNMBP_chr10_99870577_100014947	0/1	t0001	1696	84	19	22	28	7	7	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0002	1695	77	32	11	25	2	7	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	1/0	t0003	1695	49	3	18	16	2	9	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0004	1693	26	12	6	7	0	1	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0005	1692	7	3	1	0	1	2	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0006	1693	5	5	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0007	1695	4	0	0	4	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0008	1697	3	1	1	1	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0009	1695	2	2	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0010	1695	2	1	1	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0011	1693	2	2	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0012	1695	1	0	0	1	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0013	1695	1	0	1	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0014	1695	1	0	0	1	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0015	1695	1	0	0	1	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0016	1696	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0017	1695	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0018	1695	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0019	1696	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0020	1696	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0021	1696	1	0	1	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0022	1696	1	0	1	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0023	1696	1	0	1	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	t0024	1693	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMT1_chr19_10128346_10199953	1/1	t0001	376	384	89	70	172	12	39	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	t0002	376	1	0	0	0	0	1	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	t0003	376	1	1	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT3A_chr2_25222874_25346925	0/0	t0001	6683	11	1	4	5	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0002	6684	9	1	0	7	0	1	copy fasta	DNMT3A	chr2	25222874	25346925