JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNMT3A_chr2_25222874_25346925	0/1	t0003	6682	6	0	2	3	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0004	6681	5	0	1	3	1	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0005	6682	4	0	0	2	0	2	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0006	6686	4	0	0	3	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0007	6681	4	0	3	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	1/0	t0008	6683	4	2	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0009	6685	4	1	3	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0010	6683	3	0	1	2	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0011	6684	3	0	2	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0012	6682	3	0	0	3	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0013	6683	3	0	0	3	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0014	6685	3	1	0	1	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0015	6681	3	0	1	1	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0016	6682	3	0	1	1	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0017	6684	3	0	2	0	1	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0018	6688	3	0	0	2	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0019	6682	3	1	1	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0020	6683	3	3	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0021	6684	3	3	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0022	6680	3	0	3	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0023	6679	2	0	2	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0024	6685	2	0	0	1	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0025	6682	2	0	0	1	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0026	6683	2	0	2	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0027	6680	2	1	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0028	6680	2	2	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0029	6685	2	0	1	0	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0030	6685	2	0	1	0	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0031	6680	2	0	0	1	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0032	6684	2	0	0	2	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0033	6689	2	0	0	2	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0034	6684	2	0	0	1	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0035	6685	2	0	0	1	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0036	6687	2	0	0	2	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0037	6687	2	0	0	2	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0038	6682	2	2	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0039	6685	2	0	0	2	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0040	6684	2	0	0	2	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0041	6682	2	0	0	2	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0042	6687	2	0	1	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0043	6684	2	0	0	2	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0044	6684	2	2	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0045	6685	2	2	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0046	6674	2	0	0	2	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0047	6683	2	2	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0048	6669	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0049	6680	1	0	0	0	1	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0050	6682	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0051	6684	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0052	6685	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925