JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNMT3A_chr2_25222874_25346925	0/0	t0053	6684	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0054	6671	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0055	6684	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0056	6686	1	0	0	0	1	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0057	6684	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0058	6683	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0059	6684	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0060	6686	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0061	6688	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0062	6682	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0063	6681	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0064	6678	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0065	6679	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0066	6686	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0067	6687	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0068	6682	1	0	0	0	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0069	6684	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0070	6672	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0071	6681	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0072	6685	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0073	6688	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0074	6693	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0075	6685	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0076	6668	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0077	6679	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0078	6681	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0079	6684	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0080	6686	1	0	0	0	1	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0081	6687	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0082	6680	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0083	6666	1	0	0	0	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0084	6683	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0085	6677	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0086	6686	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0087	6680	1	0	0	0	1	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0088	6683	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0089	6679	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0090	6676	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0091	6689	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0092	6683	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0093	6679	1	0	0	0	1	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0094	6679	1	0	0	0	1	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0095	6682	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0096	6686	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0097	6678	1	0	0	0	1	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0098	6686	1	0	0	0	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0099	6683	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0100	6684	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0101	6684	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0102	6685	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925