JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNMT3A_chr2_25222874_25346925	0/0	t0153	6672	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0154	6683	1	0	0	0	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0155	6686	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0156	6688	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0157	6683	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0158	6677	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0159	6681	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0160	6683	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0161	6685	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0162	6686	1	0	0	0	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0163	6682	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0164	6684	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0165	6681	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0166	6683	1	0	0	0	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0167	6684	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0168	6681	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0169	6680	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0170	6685	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0171	6687	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0172	6684	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0173	6666	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0174	6684	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0175	6684	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0176	6684	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0177	6682	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0178	6680	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0179	6681	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0180	6682	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0181	6683	1	0	0	1	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0182	6682	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0183	6683	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0184	6687	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0185	6685	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0186	6679	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0187	6680	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0188	6680	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0189	6680	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0190	6678	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0191	6680	1	0	1	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0192	6686	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0193	6685	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0194	6683	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0195	6682	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0196	6683	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0197	6684	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0198	6686	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0199	6680	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0200	6665	1	1	0	0	0	0	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3A_chr2_25222874_25346925	0/0	t0201	6682	1	0	0	0	0	1	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3B_chr20_32757385_32814356	0/1	t0001	1774	195	67	28	72	3	24	copy fasta	DNMT3B	chr20	32757385	32814356