JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNMT3B_chr20_32757385_32814356	1/0	t0002	1775	35	5	13	1	2	13	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0003	1775	20	2	2	16	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0004	1775	19	0	13	0	4	2	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0005	1774	12	8	1	0	0	3	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0006	1774	2	0	1	0	0	1	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0007	1774	2	0	0	2	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0008	1774	2	2	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0009	1775	2	0	1	0	1	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0010	1774	1	1	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0011	1774	1	1	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0012	1774	1	1	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0013	1774	1	1	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0014	1774	1	1	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0015	1774	1	0	0	1	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0016	1774	1	1	0	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0017	1774	1	0	1	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	t0018	1774	1	0	0	0	0	1	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3L_chr21_44241339_44266897	1/1	t0001	224	392	92	78	166	12	42	copy fasta	DNMT3L	chr21	44241339	44266897
DNPEP_chr2_219367043_219392912	0/1	t0001	2367	262	50	57	120	9	25	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0002	2368	54	2	11	31	3	7	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	1/0	t0003	2368	15	12	2	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0004	2367	6	6	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0005	2369	4	4	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0006	2368	4	4	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0007	2368	3	3	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0008	2368	3	3	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0009	2368	3	3	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0010	2367	2	0	0	0	0	2	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0011	2368	2	1	0	1	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0012	2368	2	2	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0013	2367	1	0	0	1	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0014	2368	1	1	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0015	2367	1	0	0	1	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0016	2367	1	0	0	0	0	1	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0017	2367	1	0	1	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0018	2368	1	1	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0019	2368	1	1	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0020	2369	1	0	1	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0021	2368	1	1	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	t0022	2368	1	0	0	0	0	1	copy fasta	DNPEP	chr2	219367043	219392912
DNPH1_chr6_43220629_43234481	1/1	t0001	130	416	96	78	184	16	40	copy fasta	DNPH1	chr6	43220629	43234481
DNPH1_chr6_43220629_43234481	0/0	t0002	130	2	2	0	0	0	0	copy fasta	DNPH1	chr6	43220629	43234481
DNTTIP1_chr20_45786954_45816418	0/1	t0001	275	218	30	50	107	12	18	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP1_chr20_45786954_45816418	1/0	t0002	275	193	64	20	82	4	22	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP1_chr20_45786954_45816418	0/0	t0003	275	1	0	0	1	0	0	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP2_chr1_93861284_93884206	0/0	t0001	3624	91	1	16	54	6	14	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	1/0	t0002	3626	56	10	3	32	1	9	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0003	3627	54	13	18	18	1	4	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0004	3628	37	6	13	17	1	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0005	3627	21	0	11	2	3	5	copy fasta	DNTTIP2	chr1	93861284	93884206