JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DNTTIP2_chr1_93861284_93884206	0/0	t0006	3624	20	6	1	13	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0007	3628	14	3	2	7	0	2	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0008	3629	14	13	1	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0009	3633	7	5	1	0	0	1	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0010	3633	5	5	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0011	3625	4	0	0	3	0	1	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0012	3629	4	3	1	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0013	3626	4	4	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0014	3629	3	1	0	2	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0015	3627	3	3	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0016	3632	3	3	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0017	3624	2	2	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0018	3624	2	0	0	0	0	2	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0019	3625	2	1	0	0	1	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0020	3629	2	2	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0021	3624	1	0	0	1	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0022	3630	1	0	1	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0023	3625	1	0	0	1	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0024	3627	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0025	3623	1	0	0	1	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0026	3626	1	0	0	0	1	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0027	3625	1	0	0	1	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0028	3633	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0029	3634	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0030	3628	1	0	0	1	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0031	3625	1	0	0	0	0	1	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0032	3629	1	0	0	0	0	1	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0033	3628	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0034	3628	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0035	3624	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0036	3634	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0037	3634	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0038	3630	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0039	3629	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0040	3628	1	0	1	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0041	3627	1	0	0	1	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/1	t0042	3627	1	0	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0043	3627	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0044	3627	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0045	3627	1	1	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	t0046	3623	1	0	1	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTT_chr10_96299434_96343564	1/0	t0001	405	295	86	41	132	6	29	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	t0002	405	32	1	5	14	2	10	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	t0003	405	1	0	0	0	0	1	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	t0004	405	1	1	0	0	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/1	t0005	405	1	0	0	0	0	0	copy fasta	DNTT	chr10	96299434	96343564
DOC2A_chr16_30000514_30016027	1/1	t0001	811	291	60	50	138	12	29	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	t0002	811	17	10	3	0	4	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	t0003	811	10	9	1	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	t0004	811	2	0	0	0	0	2	copy fasta	DOC2A	chr16	30000514	30016027