JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOC2A_chr16_30000514_30016027	0/0	t0005	811	1	1	0	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	t0006	811	1	0	0	1	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	t0007	811	1	0	0	0	0	1	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	t0008	811	1	0	0	1	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	t0009	811	1	0	1	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	t0010	811	1	0	0	1	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	t0011	811	1	0	0	1	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	t0012	811	1	0	1	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2B_chr17_137789_186650	0/0	t0001	4813	122	13	21	68	2	18	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0002	4812	70	7	17	34	6	6	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0003	4826	30	16	5	4	2	3	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0004	4814	11	0	4	6	0	1	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0005	4813	9	8	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0006	4825	7	2	2	0	0	3	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0007	4814	5	5	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0008	4813	4	4	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0009	4838	4	2	0	2	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0010	4812	4	1	1	1	1	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0011	4813	4	0	3	0	1	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0012	4800	4	4	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0013	4814	3	1	1	1	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0014	4813	3	0	0	3	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0015	4812	3	0	0	3	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0016	4812	3	0	2	0	1	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0017	4810	3	2	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0018	4826	2	2	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0019	4812	2	2	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0020	4862	2	2	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0021	4813	2	0	2	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0022	4814	2	0	1	0	1	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0023	4840	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0024	4828	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0025	4813	1	0	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0026	4812	1	0	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0027	4810	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0028	4824	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0029	4812	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0030	4813	1	0	0	0	0	1	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0031	4825	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0032	4813	1	0	0	1	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0033	4813	1	0	0	1	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0034	4826	1	0	0	0	0	1	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0035	4814	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0036	4874	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0037	4824	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0038	4812	1	0	0	1	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0039	4838	1	0	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0040	4812	1	0	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0041	4813	1	0	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0042	4813	1	0	0	1	0	0	copy fasta	DOC2B	chr17	137789	186650