JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOC2B_chr17_137789_186650	0/0	t0043	4813	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0044	4812	1	0	0	1	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0045	4812	1	0	0	0	0	1	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0046	4813	1	0	0	1	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0047	4812	1	0	0	0	1	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0048	4813	1	0	0	0	0	1	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0049	4838	1	0	0	1	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0050	4813	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/1	t0051	4812	1	0	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0052	4812	1	0	0	0	1	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0053	4811	1	0	0	1	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0054	4809	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0055	4812	1	0	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0056	4811	1	0	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0057	4814	1	0	0	1	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0058	4812	1	0	0	1	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0059	4812	1	0	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0060	4812	1	1	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0061	4838	1	0	0	0	0	1	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	t0062	4812	1	0	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOCK10_chr2_224760090_225047468	0/1	t0001	726	71	51	6	8	3	2	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	1/0	t0002	726	22	5	9	3	2	2	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0003	727	21	8	3	6	1	3	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0004	726	16	1	5	3	2	5	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0005	726	13	0	6	7	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0006	727	12	1	2	7	0	2	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0007	727	4	4	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0008	727	3	3	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0009	726	2	0	2	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0010	727	2	2	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0011	726	1	0	1	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0012	726	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0013	726	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0014	726	1	0	0	0	0	1	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0015	727	1	0	0	0	0	1	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	t0016	727	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK11_chrX_118490815_118691147	1/0	t0001	498	173	56	24	67	6	19	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/1	t0002	498	30	1	12	10	1	5	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	t0003	480	3	0	2	1	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	t0004	498	2	2	0	0	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	t0005	499	1	0	0	1	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	t0006	498	1	1	0	0	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	t0007	480	1	0	1	0	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK1_chr10_126900428_127457516	0/0	t0001	1182	44	12	12	7	0	13	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/1	t0002	1180	38	18	8	9	0	2	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	1/0	t0003	1180	19	16	1	1	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0004	1179	10	8	2	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0005	1178	5	0	2	0	0	3	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0006	1182	4	0	4	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0007	1182	4	4	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516