JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOCK1_chr10_126900428_127457516	0/0	t0008	1180	2	0	0	2	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0009	1182	2	2	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0010	1180	2	2	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0011	1182	1	1	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0012	1180	1	1	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0013	1180	1	1	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0014	1180	1	0	1	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0015	1180	1	0	0	1	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	t0016	1180	1	1	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK2_chr5_169632275_170088382	0/0	t0001	577	73	33	5	27	0	8	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	t0002	577	51	20	10	12	3	6	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	1/1	t0003	577	44	2	12	14	4	10	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	t0004	577	10	4	3	1	0	2	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	t0005	577	2	2	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	t0006	577	2	2	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	t0007	577	1	0	0	0	1	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	t0008	577	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK3_chr3_50669927_51389198	1/1	t0001	2977	156	29	30	82	5	8	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0002	2977	23	1	4	17	0	1	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0003	2977	10	8	2	0	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0004	2977	5	5	0	0	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0005	2977	3	0	0	3	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0006	2977	1	0	0	1	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0007	2977	1	1	0	0	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0008	2977	1	1	0	0	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0009	2977	1	0	0	0	1	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0010	2977	1	0	0	1	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0011	2977	1	0	0	1	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0012	2977	1	0	1	0	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0013	2990	1	0	0	1	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0014	2977	1	1	0	0	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0015	2977	1	1	0	0	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0016	2977	1	0	0	1	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0017	2977	1	0	1	0	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0018	2977	1	0	0	0	0	1	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0019	2977	1	0	0	1	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	t0020	2977	1	1	0	0	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK4_chr7_111721110_112211399	0/0	t0001	2426	53	31	8	10	1	3	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	t0002	2426	32	15	6	7	1	3	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	t0003	2426	6	2	3	1	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	t0004	2426	5	5	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	t0005	2426	3	3	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	t0006	2426	1	1	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	t0007	2426	1	1	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	t0008	2426	1	1	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	t0009	2426	1	0	1	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	t0010	2415	1	1	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	t0011	2426	1	1	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	t0012	2426	1	1	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK5_chr8_25179689_25420711	0/0	t0001	4647	25	6	6	3	3	7	copy fasta	DOCK5	chr8	25179689	25420711