Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AFMID_chr17_78182362_78212702	0/1	t0001	775	78	10	20	32	4	11	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0002	773	70	34	15	9	4	8	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0003	776	66	5	14	41	2	4	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0004	782	27	0	1	24	2	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0005	774	19	4	5	3	3	4	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0006	777	19	8	4	5	0	2	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0007	783	17	0	1	15	0	1	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0008	774	14	9	4	0	0	1	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0009	771	13	0	1	9	1	2	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0010	773	12	0	3	3	0	6	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0011	776	11	10	0	1	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0012	784	11	0	0	11	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0013	775	9	0	4	5	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0014	772	7	1	0	1	0	5	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0015	775	6	5	1	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0016	776	5	0	0	5	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0017	778	5	0	0	5	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0018	778	4	2	0	1	0	1	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0019	780	4	4	0	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0020	774	3	0	0	0	0	3	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0021	774	3	0	3	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0022	778	3	0	0	3	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0023	778	3	0	0	3	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0024	773	2	2	0	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0025	773	2	2	0	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0026	770	2	1	0	1	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	1/0	t0027	775	2	0	1	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0028	776	2	0	0	2	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0029	773	2	0	0	2	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0030	778	2	0	0	2	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0031	779	2	0	0	2	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0032	779	2	0	0	2	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0033	780	2	0	0	2	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0034	785	2	0	0	2	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0035	783	1	0	0	1	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0036	774	1	0	1	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0037	774	1	0	1	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0038	776	1	1	0	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0039	777	1	1	0	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0040	774	1	0	0	0	0	1	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0041	778	1	0	0	1	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0042	778	1	0	0	1	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0043	778	1	0	0	0	0	1	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0044	779	1	0	0	1	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0045	779	1	0	0	1	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0046	782	1	1	0	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0047	783	1	0	0	1	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0048	785	1	0	0	1	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	t0049	775	1	0	1	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFM_chr4_73476745_73509001	1/1	t0001	198	364	82	72	160	14	34	copy fasta	AFM	chr4	73476745	73509001