JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DOCK5_chr8_25179689_25420711	0/1	t0002	4648	19	0	8	8	0	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0003	4645	11	2	2	5	0	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0004	4638	9	0	2	4	0	3	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	1/0	t0005	4634	8	6	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0006	4645	8	2	3	3	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0007	4646	7	0	3	2	0	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0008	4648	7	2	2	2	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0009	4648	4	0	1	3	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0010	4644	3	3	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0011	4645	3	1	0	1	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0012	4645	3	3	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0013	4638	3	1	0	2	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0014	4647	3	0	0	2	1	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0015	4646	3	3	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0016	4635	3	3	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0017	4644	3	1	1	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0018	4644	3	1	1	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0019	4638	2	0	0	2	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0020	4634	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0021	4646	2	1	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0022	4646	2	0	1	0	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0023	4647	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0024	4649	2	0	0	1	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0025	4643	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0026	4643	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0027	4644	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0028	4642	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0029	4645	2	0	2	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0030	4646	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0031	4645	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0032	4646	2	0	0	1	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0033	4645	2	1	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0034	4647	2	0	0	0	0	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0035	4648	2	0	1	0	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0036	4649	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0037	4648	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0038	4616	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0039	4621	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0040	4647	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0041	4647	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0042	4649	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0043	4649	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0044	4643	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0045	4646	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0046	4635	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0047	4645	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0048	4644	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0049	4645	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0050	4644	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	t0051	4646	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711